diff --git a/aider/coders/base_coder.py b/aider/coders/base_coder.py
index 2346c3999..b4d65c609 100755
--- a/aider/coders/base_coder.py
+++ b/aider/coders/base_coder.py
@@ -1096,8 +1096,6 @@ class Coder:
         if self.reflected_message:
             return
 
-        self.run_shell_commands()
-
         if edited and self.auto_lint:
             lint_errors = self.lint_edited(edited)
             self.auto_commit(edited, context="Ran the linter")
@@ -1109,6 +1107,8 @@ class Coder:
                     self.update_cur_messages()
                     return
 
+        self.run_shell_commands()
+
         if edited and self.auto_test:
             test_errors = self.commands.cmd_test(self.test_cmd)
             self.test_outcome = not test_errors