chore(deps): Support Python 3.13 and drop 3.9

Closes #3037

requirements/common-constraints.txt

@@ -282,7 +282,7 @@ nltk==3.9.1
     # via llama-index-core
 nodeenv==1.9.1
     # via pre-commit
-numpy==1.26.4
+numpy==2.2.4
     # via
     #   -r requirements/requirements-help.in
     #   contourpy
@@ -295,7 +295,7 @@ numpy==1.26.4
     #   soundfile
     #   streamlit
     #   transformers
-openai==1.75.0
+openai==1.76.0
     # via litellm
 oslex==0.1.3
     # via -r requirements/requirements.in
@@ -529,7 +529,7 @@ tokenizers==0.21.1
     #   transformers
 toml==0.10.2
     # via streamlit
-torch==2.2.2
+torch==2.6.0
     # via
     #   -r requirements/requirements-help.in
     #   sentence-transformers
@@ -561,7 +561,6 @@ typer==0.15.3
 typing-extensions==4.13.2
     # via
     #   altair
-    #   anyio
     #   beautifulsoup4
     #   google-generativeai
     #   huggingface-hub
@@ -570,7 +569,6 @@ typing-extensions==4.13.2
     #   pydantic
     #   pydantic-core
     #   pyee
-    #   referencing
     #   sentence-transformers
     #   sqlalchemy
     #   streamlit
@@ -610,3 +608,7 @@ yarl==1.20.0
     # via aiohttp
 zipp==3.21.0
     # via importlib-metadata
+
+# The following packages are considered to be unsafe in a requirements file:
+# pip
+# setuptools